Source code for httk.atomistic.unitcellsites

#    The high-throughput toolkit (httk)
#    Copyright (C) 2012-2015 Rickard Armiento
#    This program is free software: you can redistribute it and/or modify
#    it under the terms of the GNU Affero General Public License as
#    published by the Free Software Foundation, either version 3 of the
#    License, or (at your option) any later version.
#    This program is distributed in the hope that it will be useful,
#    but WITHOUT ANY WARRANTY; without even the implied warranty of
#    GNU Affero General Public License for more details.
#    You should have received a copy of the GNU Affero General Public License
#    along with this program.  If not, see <>.
import sys
from httk.core import HttkObject, FracVector
from httk.core.basic import is_sequence
from httk.atomistic.cell import Cell
from httk.atomistic.spacegroup import Spacegroup
from httk.atomistic.sitesutils import *
from httk.core.httkobject import HttkObject, httk_typed_init
from httk.atomistic.sites import Sites

[docs]class UnitcellSites(Sites): """ Represents any collection of sites in a unitcell """ @httk_typed_init({'reduced_coords': (FracVector, 0, 3), 'counts': [int], 'pbc': (bool, 1, 3)}, index=['counts', 'pbc']) def __init__(self, reduced_coordgroups=None, reduced_coords=None, counts=None, hall_symbol='P 1', pbc=None): """ Private constructor, as per httk coding guidelines. Use Sites.create instead. """ if hall_symbol != 'P 1' and hall_symbol is not None: raise Exception("Attempt to create FullSites object with other hall symbol than P 1, hall_symbol was:"+str(hall_symbol)) super(UnitcellSites, self).__init__(reduced_coordgroups=reduced_coordgroups, reduced_coords=reduced_coords, counts=counts, hall_symbol='P 1', pbc=pbc) @property def total_number_of_atoms(self): return sum(self._counts) def __str__(self): return "<UnitcellSites:\n"+"\n".join(["".join([" %.8f %.8f %.8f\n" % (x[0], x[1], x[2]) for x in y]) for y in self.reduced_coordgroups.to_floats()])+">"
[docs]def main(): pass
if __name__ == "__main__": main()