httk.io.vasp.poscar_reader ========================== .. py:module:: httk.io.vasp.poscar_reader .. autoapi-nested-parse:: A string-preserving reader for VASP POSCAR/CONTCAR files. :func:`read_poscar` parses a POSCAR/CONTCAR file into a neutral, JSON-able mapping whose numeric fields are kept as the **verbatim strings** found in the file. It performs no numeric conversion and imports nothing from *httk-atomistic*; turning the mapping into a ``UnitcellStructure`` is the job of ``httk.core.load``. Functions --------- .. autoapisummary:: httk.io.vasp.poscar_reader.read_poscar Module Contents --------------- .. py:function:: read_poscar(source) Parse a VASP POSCAR/CONTCAR into a neutral, string-preserving mapping. ``source`` may be a filename, opened through :class:`httk.core.TextstreamFileView` so compressed files such as ``CONTCAR.bz2`` are decompressed transparently, or an already-open text stream / iterable of lines. The returned mapping has the keys ``format`` (always ``"vasp-poscar"``), ``comment``, ``scale`` and ``volume`` (both keys are always present; exactly one is non-``None``), ``cell``, ``symbols`` (which may be ``None`` for VASP-4; any species token shaped ``[A-Z][a-z]?`` followed by ``_``, ``/`` or ``.`` is truncated to that leading symbol, so ``Li_sv``, ``O_h`` and ``Lu/`` read as ``Li``, ``O`` and ``Lu``; every other token, including ``vacancy``, is left untouched), ``counts``, ``cartesian``, ``coords``, and ``selective_dynamics`` (which may be ``None`` when selective dynamics is not declared), and ``raw`` (the original decompressed text, or ``None`` when unavailable). For filenames and binary sources, ``raw`` preserves CRLF and provides the writer's byte-exact round-trip channel. For an open text stream, it reflects the stream's already translated text and is not byte-exact. Malformed input raises a clear :class:`ValueError` naming the offending line. Three further keys report how precisely the file wrote its numbers, each the coarsest claim among the tokens it covers, or ``None`` when none of them claim anything: ``cell_precision``, ``scale_precision``, and ``coordinate_precision``. They are the precisions of the tokens **as written**, deliberately not converted: the cell vectors are still to be multiplied by the scaling factor, and the coordinates may be Cartesian or fractional depending on ``cartesian``. Doing that conversion needs the assembled cell, so it belongs to whoever builds the structure — :func:`httk.core.load` — not to the reader. :param source: POSCAR/CONTCAR filename, text stream, or iterable of source lines. :return: The neutral mapping, including the original text in ``raw`` when available. :raises ValueError: If the input is malformed.